species:   Opsin
pid:       PID1954
parent:    n_os_milR_66
paralog:   
locus:     JAAVMX010000005.1:2913114-2913239
matures:   ['UACGGCUCGCCUGUAUAGUUCU', 'AAUCCGUAGAAAGAGUGUAUA']
srr:       SRR12952898
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952898.cram JAAVMX010000005.1:2913114-2913239

1 out of bounds
57 alignments
57 proper strand
50 stranded perfect matches

  *************************                                                                       **************************  
GGUAAGAAUCCGUAGAAAGAGUGUAUAAAAAUAGCCUAGCCGGGCUUUAACUAUAUAAUAUACGUCCGUAAAGAUAUAGACCUUAUUAUCGAGAAUAUUAUACGGCUCGCCUGUAUAGUUCUUACC
(((((((((..(((.(..((((((((((....(((((....)))))....((((((....(((....)))...))))))..(((......)))....)))))).))))...).))).)))))))))
----------------------------------------------------------------------------------------------------UACGGCUCGCCUGUAUAGUUCU---- l=22 a=0 c
------AAUCCGUAGAAAGAGUGUAUA--------------------------------------------------------------------------------------------------- l=21 a=0 c*
----------------------------------------------------------------------------------------------------UACGGCUCGCCUGUAUAGUUCUUA-- l=24 a=50 ma
----AGAAUCCGUAGAAAGAGUGUAUA--------------------------------------------------------------------------------------------------- l=23 a=0 ma*

----------------------------------------------------------------------------------------------------UACGGCUCGCCUGUAUAGUUCa---- l=22 a=1 
----------------------------------------------------------------------------------------------------UACGGCUCGCCUGUAUAGUUCg---- l=22 a=1 
----------------------------------------------------------------------------------------------------UACGGCUCGCCUGUAUAGUUCUUA-- l=24 a=50 (ma)
----------------------------------------------------------------------------------------------------UcCGGCUCGCCUGUAUAGUUCUUA-- l=24 a=3 
----------------------------------------------------------------------------------------------------UACGGCUCGCCUGUAUAGUUCUcA-- l=24 a=2 

mb-01011
ax-1001111
ku-01
ss-111111101110
fn-111
